STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0054328aa long hypothetical 1-aminocyclopropane-1-carboxylate deaminase; Similar to owl:D9083216 percent identity: 41.100 in 319aa; Swiss_Prot:Q00740 percent identity: 33.333 in 323aa; Swiss_Prot:P30297 percent identity: 33.113 in 322aa; Belongs to the ACC deaminase/D-cysteine desulfhydrase family. (328 aa)    
Predicted Functional Partners:
PH0678
185aa long hypothetical ferredoxin oxidoreductase gamma subunit; Similar to owl:PFPORVOR5 percent identity: 90.270 in 185aa; PIR:F64333 percent identity: 65.698 in 179aa; owl:TMPMRFDNA2 percent identity: 44.000 in 177aa.
     
 0.808
PH0682
108aa long hypothetical ferredoxin oxidoreductase delta subunit; Similar to owl:PFPORVOR9 percent identity: 95.238 in 105aa; owl:PFPORVOR6 percent identity: 62.667 in 75aa; PIR:E64333 percent identity: 58.824 in 85aa. motif=4Fe-4S ferredoxins, iron-sulfur binding region signature.
     
  0.800
PH0684
398aa long hypothetical ferredoxin oxidoreductase alpha-2 subunit; Similar to owl:PFPORVOR10 percent identity:88.101 in 395aa; PIR:D64333 percent identity:57.377 in 373aa; owl:PFPORVOR7 percent identity:51.399 in 396aa.
     
  0.800
PH0685
334aa long hypothetical ferredoxin oxidoreductase beta subunit; Similar to owl:PFPORVOR11 percent identity: 92.145 in 331aa; PIR:C64333 percent identity: 62.821 in 252aa; owl:PFPORVOR8 percent identity: 55.187 in 257aa. motif=prokaryotic membrane lipoprotein lipid attachment site.
     
  0.800
PH0055
103aa long hypothetical protein.
       0.564
PH0052
227aa long hypothetical fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
       0.563
PH0053
404aa long hypothetical protein; Similar to PIR:F64386 percent identity: 52.669 in 283aa; owl:CEK07C53 percent identity: 39.249 in 306aa; owl:HSNOP56 percent identity: 41.102 in 239aa.
       0.563
PH0051
353aa long hypothetical dolichol-phosphate mannosyltransferase; Similar to PIR:S76171 percent identity: 41.499 in 362aa; PIR:S70643 percent identity: 43.779 in 231aa; Swiss_Prot:P54856 percent identity: 43.636 in 236aa.
       0.485
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.