STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0356370aa long hypothetical protein; Similar to PIR:G64489 percent identity: 28.736 in 369aa. (370 aa)    
Predicted Functional Partners:
PH0355
109aa long hypothetical protein.
 
     0.832
PH0027
277aa long hypothetical protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.769
PH0353
134aa long hypothetical protein; Similar to PIR:F64475 percent identity: 55.118 in 129aa; Belongs to the UPF0107 family.
       0.757
PH0354
388aa long hypothetical protein; Similar to PIR:H64463 percent identity: 57.650 in 388aa. motif=ATP/GTP-binding site motif A (P-loop).
       0.757
PH0351
373aa long hypothetical protein; Similar to PIR:S76517 percent identity: 38.434 in 291aa. motif=neutral zinc metallopeptidases, zinc-binding region signature.
 
    0.676
PH0357
520aa long hypothetical protein.
       0.543
PH0358
136aa long hypothetical protein; Similar to PIR:G64452 percent identity:40.496 in 129aa; Belongs to the UPF0216 family.
       0.543
PH1072
342aa long hypothetical geranylgeranyl pyrophosphate synthetase; Similar to owl:S75695B percent identity: 49.226 in 337aa; PIR:D64407 percent identity: 52.218 in 309aa; owl:SS56KBFR60 percent identity: 44.610 in 272aa. motif=polyprenyl synthetases signatures; Belongs to the FPP/GGPP synthase family.
 
 
 0.524
PH0350
239aa long hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA), also called psiRNA (prokaryotic silencing) in this organism (Potential). Belongs to the CRISPR-associated protein Cas6/Cse3/CasE family.
       0.415
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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