STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1584417aa long hypothetical eukaryotic peptide chain release factor subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. (417 aa)    
Predicted Functional Partners:
PH0859
590aa long hypothetical transport protein; Similar to PIR:G64389 percent identity: 61.921 in 596aa; owl:S63672 percent identity: 48.048 in 594aa; PIR:S58091 percent identity: 50.000 in 599aa. motif=4Fe-4S ferredoxins, iron-sulfur binding region signature; ABC transporters family signature; ATP/.
  
 
 0.991
PH1484
428aa long hypothetical elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
 0.901
PH0978
238aa long hypothetical 50S ribosomal protein L15; Similar to Swiss_Prot:P54060 percent identity: 70.103 in 194aa; Swiss_Prot:P49403 percent identity: 60.638 in 188aa; owl:ATFCA635 percent identity: 51.064 in 190aa. motif=ribosomal protein L15e signature; tubulin-beta mRNA autoregulation signal; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.872
PH0605
140aa long hypothetical translation initiation factor eIF-2 beta; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA; Belongs to the eIF-2-beta/eIF-5 family.
  
  
 0.833
PH1756
155aa long hypothetical 50S ribosomal protein L30; Similar to Swiss_Prot:P54046 percent identity: 66.667 in 152aa; Swiss_Prot:P14035 percent identity: 54.000 in 152aa; GENPEPT:Y07778 percent identity: 43.709 in 153aa. motif=ribosomal protein L30 signature.
  
 
 0.796
PH1731
198aa long hypothetical protein; Similar to PIR:H64415 percent identity: 44.974 in 197aa. motif=N-6 Adenine-specific DNA methylases signature.
   
 0.790
PH1767
124aa long hypothetical 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
  
  0.789
PH1706
411aa long hypothetical translation initiation factor eIF-2 gamma; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.
  
  
 0.786
PH1766
243aa long hypothetical 30S ribosomal protein S4; Similar to Swiss_Prot:P54039 percent identity: 52.720 in 247aa; Swiss_Prot:P14023 percent identity: 47.280 in 247aa; GENPEPT:Y07778 percent identity: 36.752 in 238aa. motif=ribosomal protein S4e signature; Belongs to the eukaryotic ribosomal protein eS4 family.
  
  0.783
PH0060
199aa long hypothetical 30S ribosomal protein S3a; Similar to Swiss_Prot:P54059 percent identity: 41.579 in 190aa; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.771
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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