STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1766243aa long hypothetical 30S ribosomal protein S4; Similar to Swiss_Prot:P54039 percent identity: 52.720 in 247aa; Swiss_Prot:P14023 percent identity: 47.280 in 247aa; GENPEPT:Y07778 percent identity: 36.752 in 238aa. motif=ribosomal protein S4e signature; Belongs to the eukaryotic ribosomal protein eS4 family. (243 aa)    
Predicted Functional Partners:
PH0058
158aa long hypothetical 40S ribosomal protein S13; Similar to Swiss_Prot:P54012 percent identity: 70.667 in 157aa; Swiss_Prot:Q05761 percent identity: 50.000 in 157aa; Swiss_Prot:P49203 percent identity: 48.649 in 155aa. motif=ribosomal protein S15 signature.
  
 0.999
PH0060
199aa long hypothetical 30S ribosomal protein S3a; Similar to Swiss_Prot:P54059 percent identity: 41.579 in 190aa; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 0.999
PH0615
125aa long hypothetical 30S ribosomal protein S6E; Similar to Swiss_Prot:P54067 percent identity: 64.545 in 124aa. motif=ribosomal protein S6e signature; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.999
PH0709
161aa long hypothetical protein; Toxic component of a type II toxin-antitoxin (TA) system (Potential). Processes pre-16S-rRNA at its 3' end (the D-site) to yield the mature 3' end; Belongs to the PINc/VapC protein family.
    
 0.999
PH0978
238aa long hypothetical 50S ribosomal protein L15; Similar to Swiss_Prot:P54060 percent identity: 70.103 in 194aa; Swiss_Prot:P49403 percent identity: 60.638 in 188aa; owl:ATFCA635 percent identity: 51.064 in 190aa. motif=ribosomal protein L15e signature; tubulin-beta mRNA autoregulation signal; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.999
PH1095
1044aa long hypothetical translation initiation factor IF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2 (By similarity).
  
 
 0.999
PH1103
127aa long hypothetical 30S ribosomal protein S8; Similar to Swiss_Prot:P54055 percent identity: 62.992 in 129aa; Swiss_Prot:P49402 percent identity: 49.167 in 122aa.
  
 
 0.999
PHS032
97aa long hypothetical 50S ribosomal protein L21; Similar to Swiss_Prot:P54013 percent identity: 67.368 in 95aa; Swiss_Prot:P12734 percent identity: 51.163 in 86aa; GENPEPT:F20014 percent identity: 37.500 in 72aa; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.999
PHS035
94aa long hypothetical 50S ribosomal protein L34; Similar to Swiss_Prot:P54053 percent identity: 63.095 in 85aa; GENPEPT:Y13049 percent identity: 43.750 in 84aa; Swiss_Prot:P45842 percent identity: 36.986 in 74aa; Belongs to the eukaryotic ribosomal protein eL34 family.
 
 
 0.999
PHS037
51aa long hypothetical 50S ribosomal protein L40; Similar to Swiss_Prot:P54058 percent identity: 71.111 in 45aa; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.999
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.