STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccJYccJ; Predicted Cytoplasmic Protein YccJ; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05728943.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (76 aa)    
Predicted Functional Partners:
wrbA
WrbA; Flavoprotein WrbA; Similar to Pantoea sp. At-9b, flavoprotein WrbA (NCBI: ZP_05728944.1); COG: Cell division and chromosome partitioning; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.949
ssdA
SsdA; Succinate-semialdehyde dehydrogenase [NADP+]; Similar to Pantoea sp. At-9b, Aldehyde Dehydrogenase (NCBI: ZP_05728942.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
       0.777
ygaM
YgaM; Inner Membrane Protein; Similar to Pantoea sp. At-9b, protein of unknown function DUF883 ElaB (NCBI: ZP_05727850.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
   
  
 0.534
yeaG
YeaG; Serine Protein Kinase; Similar to Pantoea sp. At-9b, putative serine protein kinase, PrkA (NCBI: ZP_05729433.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown.
   
    0.533
yqjC
YqjC; Protein YqjC precursor; Similar to Pantoea sp. At-9b, protein of unknown function DUF1090 (NCBI: ZP_05730738.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
   
    0.533
ycgB
YcgB; Stage V Sporulation Protein R; Similar to Pantoea sp. At-9b, SpoVR family protein (NCBI: ZP_05728583.1); COG: Cell division and chromosome partitioning; Subcellular localization as predicted by Psort 2.0: Unknown.
   
    0.532
osmY
OsmY; Osmotically inducible protein Y precursor; Similar to Pantoea sp. At-9b, transport-associated protein (NCBI: ZP_05729321.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Periplasmic.
   
    0.531
ybaY
YbaY; Glycoprotein/Polysaccharide Metabolism; Similar to Pantoea sp. At-9b, putative glycoprotein involved in polysaccharide metabolism (NCBI: ZP_05727501.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
   
    0.528
msyB
MsyB; Acidic protein MsyB; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_20610 (NCBI: YP_001907988.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
   
    0.515
dps
Dps; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
   
    0.514
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.