STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsB-3RbsB; D-ribose-binding periplasmic protein precursor; Similar to Pantoea ananatis, putative sugar ABC transporter, periplasmic protein (NCBI: BAG32261.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic. (306 aa)    
Predicted Functional Partners:
rbsC-6
RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea ananatis, putative sugar ABC transporter, permease protein (NCBI: BAG32264.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 0.988
rbsA-6
RbsA; Ribose transport ATP-binding protein RbsA; Similar to Pantoea ananatis, putative sugar ABC transporter, ATP-binding protein (NCBI: BAG32263.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  0.968
PANA_1668
Hypothetical Protein; Similar to Pantoea ananatis, hypothetical protein (NCBI: BAG32262.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
 
    0.889
rbsC-10
RbsC; Ribose transport system permease protein RbsC; Similar to Pectobacterium wasabiae WPP163, inner-membrane translocator (NCBI: YP_003261064.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.840
rbsC
RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05729593.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.837
rbsC-2
RbsC; Ribose transport system permease protein RbsC; Similar to Rhizobium leguminosarum bv. viciae 3841, putative permease component of ABC transporter (NCBI: YP_770982.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.837
rbsD
RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.831
rbsC-7
RbsC; Ribose transport system permease protein RbsC; Similar to Tolumonas auensis DSM 9187, inner-membrane translocator (NCBI: YP_002893126.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.831
rbsC-4
RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05729856.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.827
rbsC-9
RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05728949.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.816
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.