STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaKPcaK; 4-hydroxybenzoate transporter; Similar to Pantoea sp. At-9b, protein of unknown function DUF1338 (NCBI: ZP_05729543.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (446 aa)    
Predicted Functional Partners:
ttuB-2
TtuB; Putative tartrate transporter; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05728080.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.619
ttuB
TtuB; Putative tartrate transporter; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05729656.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.603
ydcJ
YdcJ; Cytoplasmic Protein YdcJ; Similar to Pantoea sp. At-9b, DoxX family protein (NCBI: ZP_05729542.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.598
yjjL-2
YjjL; Inner membrane transport protein YjjL; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05732042.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.531
yjjL
YjjL; Inner membrane transport protein YjjL; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05729642.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.438
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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