STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsC-9RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05728949.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (350 aa)    
Predicted Functional Partners:
mglA
MglA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  0.996
mocB
MocB; Putative rhizopine-binding protein precursor; Similar to Klebsiella pneumoniae subsp. pneumoniae MGH 78578, putative periplasmic binding protein (NCBI: YP_001334189.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 0.989
rbsB-4
RbsB; Ribose-binding periplasmic protein precursor; Similar to Yersinia frederiksenii ATCC 33641, Periplasmic binding protein/LacI transcriptional regulator (NCBI: ZP_04634078.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 0.841
rbsA
RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   0.823
rbsA-9
RbsA; Ribose transport ATP-binding protein RbsA; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05730111.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
   0.818
rbsA-8
RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
   0.817
rbsB-3
RbsB; D-ribose-binding periplasmic protein precursor; Similar to Pantoea ananatis, putative sugar ABC transporter, periplasmic protein (NCBI: BAG32261.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 0.816
mglA-2
MglA; Galactoside transport ATP-binding protein MglA; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05730892.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
   0.812
rbsB-2
RbsB; D-ribose-binding periplasmic protein precursor; Similar to Klebsiella pneumoniae NTUH-K2044, putative ABC transport system nucleotide binding/ATPase component (NCBI: YP_002919499.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 0.811
rbsB
RbsB; D-ribose-binding periplasmic protein precursor; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05729592.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
 0.808
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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