STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PANA_2447Hemolysin coregulated Protein Hcp; Similar to Pantoea sp. At-9b, type VI secretion system effector, Hcp1 family (NCBI: ZP_05731830.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Extracellular. (160 aa)    
Predicted Functional Partners:
PANA_2446
Hemolysin coregulated Protein Hcp; Similar to Pantoea sp. At-9b, type VI secretion system effector, Hcp1 family (NCBI: ZP_05731830.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Extracellular.
 
  
 
0.967
PANA_2366
Hypothetical Protein; Similar to Pantoea sp. At-9b, type VI secretion protein, VC_A0107 family (NCBI: ZP_05728977.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 
 0.941
PANA_2365
Hypothetical Protein; Similar to Pantoea sp. At-9b, type VI secretion protein, EvpB/VC_A0108 family (NCBI: ZP_05728976.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 
 0.915
PANA_4146
Hemolysin Co-regulated Protein Hcp; Similar to Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884, Hcp family type VI secretion system effector (NCBI: ZP_06016084.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
  
 0.915
ytxE
YtxE; Flagellar Motor Protein; Similar to Pectobacterium wasabiae WPP163, type IV / VI secretion system protein, DotU family (NCBI: YP_003259833.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.910
PANA_2367
Hypothetical Protein; ImpA-Related N-Terminal Family; Similar to Pectobacterium wasabiae WPP163, type VI secretion-associated protein, ImpA family (NCBI: YP_003259830.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
 0.908
PANA_2352
Rhs Element Vgr Protein; Similar to Cronobacter turicensis, hypothetical protein Ctu_00910 (NCBI: YP_003208454.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
 0.905
PANA_2364
Hypothetical Protein; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_06200 (NCBI: YP_001906564.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
  
 
0.901
PANA_2355
Hypothetical Protein; Similar to Pantoea sp. At-9b, type VI secretion protein, VC_A0111 family (NCBI: ZP_05728963.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
 0.895
PANA_4150
Hypothetical Protein; Similar to Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, hypothetical protein SARI_02733 (NCBI: YP_001571731.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 
 0.890
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.