STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfbQYfbQ; Probable aminotransferase YfbQ; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05730575.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (421 aa)    
Predicted Functional Partners:
ilvD
IlvD; Dihydroxy-acid dehydratase; Similar to Burkholderia xenovorans LB400, dihydroxy-acid dehydratase (NCBI: YP_557406.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.916
ilvD-2
IlvD; Dihydroxy-acid dehydratase; Similar to Pantoea sp. At-9b, dihydroxy-acid dehydratase (NCBI: ZP_05732515.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the IlvD/Edd family.
  
 
 0.916
ocd2
Ocd2; Ornithine cyclodeaminase 2; Similar to Sinorhizobium meliloti 1021, cyclodeaminase (NCBI: NP_436275.2); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
    
 0.915
argA
ArgA; Amino-acid acetyltransferase; Similar to Pantoea sp. At-9b, amino-acid N-acetyltransferase (NCBI: ZP_05732180.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.915
ilvE
IlvE; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.915
aspC
AspC; Aspartate aminotransferase; Similar to Pantoea sp. At-9b, Aspartate transaminase (NCBI: ZP_05728903.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
   
 0.914
gdhA
GdhA; Glutamate dehydrogenase; Similar to Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, hypothetical protein SPAB_01425 (NCBI: YP_001587665.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.913
leuA
LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
  
 
 0.908
leuA-2
LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
  
 
 0.908
avtA
AvtA; Valine--pyruvate aminotransferase; Similar to Pantoea sp. At-9b, aminotransferase class I and II (NCBI: ZP_05729654.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.905
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.