STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvrEYvrE; Senescence Marker Protein-; Similar to Pantoea sp. At-9b, SMP-30/Gluconolaconase/LRE domain protein (NCBI: ZP_05727628.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (291 aa)    
Predicted Functional Partners:
gnl
Gnl; Gluconolactonase precursor; Similar to Pantoea sp. At-9b, Gluconolactonase (NCBI: ZP_05728077.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.623
gnl-2
Gnl; Gluconolactonase precursor; Similar to Burkholderia phymatum STM815, SMP-30/gluconolaconase/LRE domain-containing protein (NCBI: YP_001862137.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
     0.591
rspA
RspA; Has low D-gluconate dehydratase activity (in vitro), suggesting that it has no significant role in D-gluconate degradation in vivo. Has no detectable activity with a panel of 70 other acid sugars (in vitro); Belongs to the mandelate racemase/muconate lactonizing enzyme family. GalD subfamily.
 
   
 0.529
iclR
IclR; Acetate operon repressor; Similar to Pantoea sp. At-9b, transcriptional regulator, IclR family (NCBI: ZP_05731762.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
      0.423
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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