STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqaBYqaB; Phosphatase YqaB; Similar to Pantoea sp. At-9b, beta-phosphoglucomutase family hydrolase (NCBI: ZP_05731669.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (190 aa)    
Predicted Functional Partners:
gshA
GshA; Glutamate-cysteine ligase; Similar to Pantoea sp. At-9b, glutamate/cysteine ligase (NCBI: ZP_05731667.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Outer Membrane; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
 0.834
yqaA
YqaA; Inner membrane protein YqaA; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_26630 (NCBI: YP_001908583.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.829
yegT
YegT; Putative nucleoside transporter YegT; Similar to Pantoea sp. At-9b, nucleoside transporter (NCBI: ZP_05726955.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 0.539
hcaT
HcaT; Probable 3-phenylpropionic acid transporter; Similar to Pantoea sp. At-9b, Chloramphenicol O-acetyltransferase (NCBI: ZP_05727772.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.533
luxS
LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
       0.432
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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