STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PANA_4064Hypothetical Protein; Similar to Moritella sp. PE36, sensory box/GGDEF domain protein (NCBI: ZP_01897687.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (238 aa)    
Predicted Functional Partners:
yciR-2
YciR; Diguanylate Cyclase/Phosphodiesterase; Similar to Azorhizobium caulinodans ORS 571, putative signaling protein (NCBI: YP_001523332.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.859
ydcR
YdcR; Transcriptional Regulator GntR Family; Similar to Pantoea sp. At-9b, diguanylate cyclase/phosphodiesterase withMHYT sensor (NCBI: ZP_05732079.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.790
yciR-3
YciR; Diguanylate Cyclase/Phosphodiesterase; Similar to Erwinia pyrifoliae Ep1/96, sensory box protein (NCBI: YP_002650247.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.789
yhjK
YhjK; Protein YhjK; Similar to Pantoea sp. At-9b, diguanylate cyclase/phosphodiesterase with extracellular sensor (NCBI: ZP_05730648.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.780
yciR-4
YciR; Diguanylate Cyclase/Phosphodiesterase; Similar to Pantoea sp. At-9b, diguanylate cyclase/phosphodiesterase with GAF sensor (NCBI: ZP_05728229.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.775
rtn-2
Rtn; Protein Rtn; Similar to Pantoea sp. At-9b, diguanylate phosphodiesterase (NCBI: ZP_05730914.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.768
ydaM
YdaM; Diguanylate Cyclase; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_03900 (NCBI: YP_001906344.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.760
pleD-2
PleD; Response regulator PleD; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_03900 (NCBI: YP_001906344.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
     0.757
yedQ
YedQ; GGDEF Family Protein; Similar to Pantoea sp. At-9b, diguanylate cyclase (NCBI: ZP_05728720.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.751
yddU
YddU; Diguanylate Cyclase/Phosphodiesterase; Similar to Pantoea sp. At-9b, diguanylate cyclase/phosphodiesterase with GAF sensor (NCBI: ZP_05728229.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.748
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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