STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM25648.1Hypothetical protein. (471 aa)    
Predicted Functional Partners:
AFM26665.1
Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat.
 
 
 0.778
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.777
AFM25119.1
PFAM: Bacterial transcriptional activator domain; Tetratricopeptide repeat.
 
 
 0.775
AFM24335.1
WD40 repeat-containing protein; PFAM: Protein kinase domain; WD domain, G-beta repeat.
 
 0.772
AFM24228.1
PFAM: Tetratricopeptide repeat.
 
 
 0.771
AFM25793.1
PFAM: Tetratricopeptide repeat.
  
     0.767
AFM23951.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat.
 
 
 0.766
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.753
AFM24153.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat; SEC-C motif.
 
     0.751
AFM25459.1
Putative N-acetylglucosaminyl transferase; PFAM: Tetratricopeptide repeat.
 
   
 0.751
Your Current Organism:
Desulfomonile tiedjei
NCBI taxonomy Id: 706587
Other names: D. tiedjei DSM 6799, Desulfomonile tiedjei DCB-1, Desulfomonile tiedjei DSM 6799, Desulfomonile tiedjei str. DSM 6799, Desulfomonile tiedjei strain DSM 6799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.