STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSLN_LOCUS8005Uncharacterized protein. (335 aa)    
Predicted Functional Partners:
SSLN_LOCUS2287
Fanconi anemia group M protein.
   
 0.994
SSLN_LOCUS4787
FANCI_S4 domain-containing protein.
   
 0.990
SSLN_LOCUS3387
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.972
RS27A
Ubiquitin-40S ribosomal protein S27a.
    
  0.963
SSLN_LOCUS4411
Uncharacterized protein.
   
 0.960
A0A183TEP6
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
    
 0.945
SSLN_LOCUS4385
Uncharacterized protein.
    
 0.911
UBCD1
Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.900
RL40
Ubiquitin-60S ribosomal protein L40.
    
  0.898
SSLN_LOCUS480
FANCI_S2 domain-containing protein.
   
 0.880
Your Current Organism:
Schistocephalus solidus
NCBI taxonomy Id: 70667
Other names: S. solidus
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