D7EIK1_TRICA protein (Tribolium castaneum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D7EIK1_TRICA

Uncharacterized protein. (379 aa)

Predicted Functional Partners:

D6WQT6_TRICA

0.821

D6WB31_TRICA

0.761

D6WA57_TRICA

0.684

A0A139WHY6

0.598

D6WL56_TRICA

0.593

D6X063_TRICA

0.583

D6W6Z5_TRICA

0.573

D6WKW3_TRICA

0.573

CAND1

0.558

D7EL49_TRICA

0.556

Your Current Organism:

Tribolium castaneum

NCBI taxonomy Id: 7070
Other names: T. castaneum, red flour beetle, rust-red flour beetle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A139WHY6	D7EIK1_TRICA	A0A139WHY6	D7EIK1	Uncharacterized protein.	Uncharacterized protein.	0.598
CAND1	D6W6Z5_TRICA	A0A139WP38	D6W6Z5	Cullin-associated NEDD8-dissociated protein 1-like Protein.	COMM domain-containing protein 4-like Protein.	0.582
CAND1	D6WA57_TRICA	A0A139WP38	D6WA57	Cullin-associated NEDD8-dissociated protein 1-like Protein.	Cullin homolog 1-like Protein; Belongs to the cullin family.	0.896
CAND1	D6WB31_TRICA	A0A139WP38	D6WB31	Cullin-associated NEDD8-dissociated protein 1-like Protein.	Transcription elongation factor B polypeptide 2-like Protein.	0.833
CAND1	D6WL56_TRICA	A0A139WP38	D6WL56	Cullin-associated NEDD8-dissociated protein 1-like Protein.	NEDD8-like Protein.	0.862
CAND1	D6WQT6_TRICA	A0A139WP38	D6WQT6	Cullin-associated NEDD8-dissociated protein 1-like Protein.	Transcription elongation factor B polypeptide 1-like Protein; Belongs to the SKP1 family.	0.867
CAND1	D6X063_TRICA	A0A139WP38	D6X063	Cullin-associated NEDD8-dissociated protein 1-like Protein.	COMM domain-containing protein 8-like Protein.	0.498
CAND1	D7EIK1_TRICA	A0A139WP38	D7EIK1	Cullin-associated NEDD8-dissociated protein 1-like Protein.	Uncharacterized protein.	0.558
D6W6Z5_TRICA	CAND1	D6W6Z5	A0A139WP38	COMM domain-containing protein 4-like Protein.	Cullin-associated NEDD8-dissociated protein 1-like Protein.	0.582
D6W6Z5_TRICA	D6WA57_TRICA	D6W6Z5	D6WA57	COMM domain-containing protein 4-like Protein.	Cullin homolog 1-like Protein; Belongs to the cullin family.	0.634
D6W6Z5_TRICA	D6WB31_TRICA	D6W6Z5	D6WB31	COMM domain-containing protein 4-like Protein.	Transcription elongation factor B polypeptide 2-like Protein.	0.612
D6W6Z5_TRICA	D6WKW3_TRICA	D6W6Z5	D6WKW3	COMM domain-containing protein 4-like Protein.	COMM domain-containing protein 2-like Protein.	0.918
D6W6Z5_TRICA	D6WL56_TRICA	D6W6Z5	D6WL56	COMM domain-containing protein 4-like Protein.	NEDD8-like Protein.	0.675
D6W6Z5_TRICA	D6X063_TRICA	D6W6Z5	D6X063	COMM domain-containing protein 4-like Protein.	COMM domain-containing protein 8-like Protein.	0.852
D6W6Z5_TRICA	D7EIK1_TRICA	D6W6Z5	D7EIK1	COMM domain-containing protein 4-like Protein.	Uncharacterized protein.	0.573
D6W6Z5_TRICA	D7EL49_TRICA	D6W6Z5	D7EL49	COMM domain-containing protein 4-like Protein.	COMM domain-containing protein.	0.885
D6WA57_TRICA	CAND1	D6WA57	A0A139WP38	Cullin homolog 1-like Protein; Belongs to the cullin family.	Cullin-associated NEDD8-dissociated protein 1-like Protein.	0.896
D6WA57_TRICA	D6W6Z5_TRICA	D6WA57	D6W6Z5	Cullin homolog 1-like Protein; Belongs to the cullin family.	COMM domain-containing protein 4-like Protein.	0.634
D6WA57_TRICA	D6WB31_TRICA	D6WA57	D6WB31	Cullin homolog 1-like Protein; Belongs to the cullin family.	Transcription elongation factor B polypeptide 2-like Protein.	0.990
D6WA57_TRICA	D6WL56_TRICA	D6WA57	D6WL56	Cullin homolog 1-like Protein; Belongs to the cullin family.	NEDD8-like Protein.	0.983