H9J1Q5_BOMMO protein (Bombyx mori) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H9J1Q5_BOMMO

Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (439 aa)

Predicted Functional Partners:

H9JE76_BOMMO

0.801

H9JRM6_BOMMO

0.783

H9IZU9_BOMMO

0.682

H9IZV0_BOMMO

0.682

H9JE43_BOMMO

0.666

H9JV50_BOMMO

0.658

H9IXX0_BOMMO

0.657

Tua3

0.645

Tua2

0.643

Tua1

0.643

Your Current Organism:

Bombyx mori

NCBI taxonomy Id: 7091
Other names: B. mori, domestic silkworm, silk moth, silkworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H9IXX0_BOMMO	H9IZU9_BOMMO	H9IXX0	H9IZU9	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Doublecortin domain-containing protein.	0.744
H9IXX0_BOMMO	H9IZV0_BOMMO	H9IXX0	H9IZV0	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.744
H9IXX0_BOMMO	H9J1Q5_BOMMO	H9IXX0	H9J1Q5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.657
H9IXX0_BOMMO	H9JE76_BOMMO	H9IXX0	H9JE76	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.883
H9IXX0_BOMMO	H9JRM6_BOMMO	H9IXX0	H9JRM6	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.898
H9IZU9_BOMMO	H9IXX0_BOMMO	H9IZU9	H9IXX0	Doublecortin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.744
H9IZU9_BOMMO	H9IZV0_BOMMO	H9IZU9	H9IZV0	Doublecortin domain-containing protein.	Uncharacterized protein.	0.901
H9IZU9_BOMMO	H9J1Q5_BOMMO	H9IZU9	H9J1Q5	Doublecortin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.682
H9IZU9_BOMMO	H9JE43_BOMMO	H9IZU9	H9JE43	Doublecortin domain-containing protein.	Uncharacterized protein.	0.744
H9IZU9_BOMMO	H9JE76_BOMMO	H9IZU9	H9JE76	Doublecortin domain-containing protein.	Uncharacterized protein.	0.528
H9IZU9_BOMMO	H9JRM6_BOMMO	H9IZU9	H9JRM6	Doublecortin domain-containing protein.	Uncharacterized protein.	0.445
H9IZU9_BOMMO	H9JV50_BOMMO	H9IZU9	H9JV50	Doublecortin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.744
H9IZU9_BOMMO	Tua1	H9IZU9	P52273	Doublecortin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.744
H9IZU9_BOMMO	Tua2	H9IZU9	H9IZ57	Doublecortin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.744
H9IZU9_BOMMO	Tua3	H9IZU9	H9J591	Doublecortin domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.744
H9IZV0_BOMMO	H9IXX0_BOMMO	H9IZV0	H9IXX0	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.744
H9IZV0_BOMMO	H9IZU9_BOMMO	H9IZV0	H9IZU9	Uncharacterized protein.	Doublecortin domain-containing protein.	0.901
H9IZV0_BOMMO	H9J1Q5_BOMMO	H9IZV0	H9J1Q5	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.682
H9IZV0_BOMMO	H9JE43_BOMMO	H9IZV0	H9JE43	Uncharacterized protein.	Uncharacterized protein.	0.744
H9IZV0_BOMMO	H9JE76_BOMMO	H9IZV0	H9JE76	Uncharacterized protein.	Uncharacterized protein.	0.528

page 1 of 5

Server load: low (22%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About