STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFIO01_10534Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (793 aa)    
Predicted Functional Partners:
CFIO01_05295
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
0.939
CFIO01_04412
Formyl transferase.
    
 0.934
CFIO01_11779
Cys/Met metabolism PLP-dependent enzyme.
   
 
 0.910
CFIO01_12468
5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase.
    
 0.905
CFIO01_05015
Leucyl-tRNA synthetase.
  
 0.879
CFIO01_02429
Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.879
CFIO01_07786
Prolyl-tRNA synthetase.
  
 0.830
CFIO01_01451
Prolyl-tRNA synthetase.
  
 0.825
CFIO01_06367
Lysyl-tRNA synthetase.
  
 0.822
CFIO01_04169
Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.820
Your Current Organism:
Colletotrichum fioriniae
NCBI taxonomy Id: 1445577
Other names: C. fioriniae PJ7, Colletotrichum fioriniae PJ7
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