STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mycch_2310PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (447 aa)    
Predicted Functional Partners:
Mycch_1085
PFAM: Pyridoxal-dependent decarboxylase conserved domain; TIGRFAM: glutamate decarboxylase; Belongs to the group II decarboxylase family
  
 0.977
Mycch_4272
PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family
  
 0.945
Mycch_1172
PFAM: Aldehyde dehydrogenase family
  
 0.943
Mycch_0094
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family
  
 0.942
Mycch_1750
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family
  
 0.942
Mycch_2488
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family
  
 0.942
Mycch_4334
PFAM: Aldehyde dehydrogenase family
  
 0.942
Mycch_4518
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family
  
 0.942
Mycch_0988
PFAM: Aldehyde dehydrogenase family; TIGRFAM: methylmalonic acid semialdehyde dehydrogenase
  
 0.940
Mycch_1251
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family
  
 0.940
Your Current Organism:
Mycobacterium chubuense
NCBI taxonomy Id: 710421
Other names: M. chubuense NBB4, Mycobacterium chubuense, Mycobacterium chubuense NBB4, Mycobacterium chubuense str. NBB4, Mycobacterium chubuense strain NBB4
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