STRINGSTRING
rhs protein (Pantoea vagans) - STRING interaction network
"rhs" - Rhs family protein in Pantoea vagans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhsRhs family protein (1493 aa)    
Predicted Functional Partners:
Pvag_1047
Uncharacterized protein (125 aa)
   
   
  0.895
vgrS
Putative type VI secretion system, effector protein vgrS; Uncharacterized protein conserved in bacteria (738 aa)
   
  0.809
Pvag_1086
Putative type VI secretion system, core protein; Uncharacterized conserved protein, contains FHA domain (378 aa)
 
   
  0.760
Pvag_1035
annotation not available (619 aa)
 
   
  0.737
ADO07925.1
Uncharacterized protein (143 aa)
 
   
  0.713
yhhZ
annotation not available (348 aa)
 
     
  0.710
Pvag_0307
annotation not available (106 aa)
   
          0.626
Pvag_1089
Putative type VI secretion system, core protein; Uncharacterized protein conserved in bacteria (405 aa)
 
   
  0.613
Pvag_1046
annotation not available (281 aa)
              0.609
flgJ
Flagellar biosynthesis; Rod binding protein (320 aa)
           
  0.598
Your Current Organism:
Pantoea vagans
NCBI taxonomy Id: 712898
Other names: P. vagans C9-1, Pantoea vagans, Pantoea vagans C9-1, Pantoea vagans str. C9-1, Pantoea vagans strain C9-1
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