STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06680COG2375 Siderophore-interacting protein. (274 aa)    
Predicted Functional Partners:
UvrA
COG0178 Excinuclease ATPase subunit.
 
   
 0.819
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.775
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.775
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.775
RAM_06675
Phosphotransferase.
       0.773
RAM_28250
ABC transporter ATPase/permease; COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
   0.699
RAM_41840
COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
   0.699
RAM_44245
COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
   0.699
RAM_06690
COG1309 Transcriptional regulator.
 
     0.613
RAM_42425
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
  
 0.586
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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