STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_17500Hypothetical protein. (397 aa)    
Predicted Functional Partners:
RAM_31655
Hypothetical protein.
  
     0.665
RAM_27530
Hypothetical protein; COG3483 Tryptophan 2,3-dioxygenase (vermilion).
  
     0.650
RAM_17505
COG1695 Predicted transcriptional regulators.
       0.594
RAM_20000
Hypothetical protein.
  
     0.583
RAM_27155
Phage integrase family protein; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.577
RAM_40595
Hypothetical protein.
  
     0.567
RAM_35510
NTPase-like protein; COG0489 ATPases involved in chromosome partitioning.
  
     0.552
RAM_17510
Hypothetical protein.
       0.534
RAM_18490
Polymorphic outer membrane protein.
  
     0.532
RAM_24680
Lipoprotein.
  
     0.529
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.