Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HI_0073 | HI_0074 | HI_0073 | HI_0074 | Predicted coding region HI0073; Hypothetical protein; identified by GeneMark; putative. | Predicted coding region HI0074; Hypothetical protein; identified by GeneMark; putative. | 0.980 |
HI_0073 | HI_1407 | HI_0073 | HI_1407 | Predicted coding region HI0073; Hypothetical protein; identified by GeneMark; putative. | traN-related protein; Similar to GB:L10330 PID:437700 percent identity: 40.17; identified by sequence similarity; putative; To E.coli plasmid IncP-alpha RP4 protein TraN. | 0.463 |
HI_0073 | nrdD | HI_0073 | HI_0075 | Predicted coding region HI0073; Hypothetical protein; identified by GeneMark; putative. | Anaerobic ribonucleoside-triphosphate reductase (nrdD); Catalyzes the conversion of ribonucleotides into deoxyribonucleotides, which are required for DNA synthesis and repair. Belongs to the anaerobic ribonucleoside-triphosphate reductase family. | 0.424 |
HI_0074 | HI_0073 | HI_0074 | HI_0073 | Predicted coding region HI0074; Hypothetical protein; identified by GeneMark; putative. | Predicted coding region HI0073; Hypothetical protein; identified by GeneMark; putative. | 0.980 |
HI_0074 | nrdD | HI_0074 | HI_0075 | Predicted coding region HI0074; Hypothetical protein; identified by GeneMark; putative. | Anaerobic ribonucleoside-triphosphate reductase (nrdD); Catalyzes the conversion of ribonucleotides into deoxyribonucleotides, which are required for DNA synthesis and repair. Belongs to the anaerobic ribonucleoside-triphosphate reductase family. | 0.424 |
HI_1407 | HI_0073 | HI_1407 | HI_0073 | traN-related protein; Similar to GB:L10330 PID:437700 percent identity: 40.17; identified by sequence similarity; putative; To E.coli plasmid IncP-alpha RP4 protein TraN. | Predicted coding region HI0073; Hypothetical protein; identified by GeneMark; putative. | 0.463 |
nrdD | HI_0073 | HI_0075 | HI_0073 | Anaerobic ribonucleoside-triphosphate reductase (nrdD); Catalyzes the conversion of ribonucleotides into deoxyribonucleotides, which are required for DNA synthesis and repair. Belongs to the anaerobic ribonucleoside-triphosphate reductase family. | Predicted coding region HI0073; Hypothetical protein; identified by GeneMark; putative. | 0.424 |
nrdD | HI_0074 | HI_0075 | HI_0074 | Anaerobic ribonucleoside-triphosphate reductase (nrdD); Catalyzes the conversion of ribonucleotides into deoxyribonucleotides, which are required for DNA synthesis and repair. Belongs to the anaerobic ribonucleoside-triphosphate reductase family. | Predicted coding region HI0074; Hypothetical protein; identified by GeneMark; putative. | 0.424 |