STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HI_1501Predicted coding region HI1501; Hypothetical protein; identified by GeneMark; putative; To phage Mu protein gp29. (520 aa)    
Predicted Functional Partners:
HI_1499
Predicted coding region HI1499; Hypothetical protein; identified by GeneMark; putative; To phage Mu protein gp27.
 
    0.947
HI_1500
Predicted coding region HI1500; Hypothetical protein; identified by GeneMark; putative; To phage Mu protein gp28.
 
    0.946
HI_1498.1
Predicted coding region HI1498.1; Brute Force ORF; identified by GeneMark; putative.
 
     0.941
HI_1505
Predicted coding region HI1505; Hypothetical protein; identified by GeneMark; putative; To phage Mu protein T.
 
  
 0.941
HI_1514
Predicted coding region HI1514; Hypothetical protein; identified by GeneMark; putative.
 
  
 0.917
HI_1502
Predicted coding region HI1502; Involved in virion morphogenesis.
    0.897
HI_1478
Transposase (muA); This transposase is essential for integration, replication- transposition, and excision of Mu-like viral DNA.
 
  
 0.879
HI_1481
DNA transposition protein (muB); This protein is a non-specific DNA-binding and ATP- hydrolyzing protein essential for bacteriophage integration and replication.
 
  
 0.874
nlp
DNA-binding protein (ner); Negative regulator of transcription starting from the Pe and Pc promoters of Mu. Also negatively regulates its own gene transcription (By similarity).
  
   
 0.864
HI_1504
I protein (muI); Potential protease involved in virion morphogenesis.
 
    0.841
Your Current Organism:
Haemophilus influenzae
NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.