Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

HI_1051

Uncharacterized ABC transporter ATP-binding protein HI_1051; Similar to GB-AL009126 percent identity- 33.76; identified by sequence similarity; putative (614 aa)

Predicted Functional Partners:

HI_1052

0.616

polA

0.460

HI_1053

0.444

Your Current Organism:

Haemophilus influenzae

NCBI taxonomy Id: 71421
Other names: H. influenzae Rd KW20, Haemophilus influenzae, Haemophilus influenzae KW20, Haemophilus influenzae Rd, Haemophilus influenzae Rd KW20

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same PNG format, but resolution at 400 dpi

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HI_1051	HI_1052	HI_1051	HI_1052	Uncharacterized ABC transporter ATP-binding protein HI_1051; Similar to GB-AL009126 percent identity- 33.76; identified by sequence similarity; putative	Uncharacterized HTH-type transcriptional regulator HI_1052; Similar to SP-P35319 PID-581707 percent identity- 25.67; identified by sequence similarity; putative	0.616
HI_1051	HI_1053	HI_1051	HI_1053	Uncharacterized ABC transporter ATP-binding protein HI_1051; Similar to GB-AL009126 percent identity- 33.76; identified by sequence similarity; putative	Uncharacterized protein HI_1053; Similar to GB-M66060 SP-P27749 PID-141897 percent identity- 31.86; identified by sequence similarity; putative	0.444
HI_1051	polA	HI_1051	HI_0856	Uncharacterized ABC transporter ATP-binding protein HI_1051; Similar to GB-AL009126 percent identity- 33.76; identified by sequence similarity; putative	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3’-5’ and 5’-3’ exonuclease activity	0.460
HI_1052	HI_1051	HI_1052	HI_1051	Uncharacterized HTH-type transcriptional regulator HI_1052; Similar to SP-P35319 PID-581707 percent identity- 25.67; identified by sequence similarity; putative	Uncharacterized ABC transporter ATP-binding protein HI_1051; Similar to GB-AL009126 percent identity- 33.76; identified by sequence similarity; putative	0.616
HI_1052	HI_1053	HI_1052	HI_1053	Uncharacterized HTH-type transcriptional regulator HI_1052; Similar to SP-P35319 PID-581707 percent identity- 25.67; identified by sequence similarity; putative	Uncharacterized protein HI_1053; Similar to GB-M66060 SP-P27749 PID-141897 percent identity- 31.86; identified by sequence similarity; putative	0.787
HI_1053	HI_1051	HI_1053	HI_1051	Uncharacterized protein HI_1053; Similar to GB-M66060 SP-P27749 PID-141897 percent identity- 31.86; identified by sequence similarity; putative	Uncharacterized ABC transporter ATP-binding protein HI_1051; Similar to GB-AL009126 percent identity- 33.76; identified by sequence similarity; putative	0.444
HI_1053	HI_1052	HI_1053	HI_1052	Uncharacterized protein HI_1053; Similar to GB-M66060 SP-P27749 PID-141897 percent identity- 31.86; identified by sequence similarity; putative	Uncharacterized HTH-type transcriptional regulator HI_1052; Similar to SP-P35319 PID-581707 percent identity- 25.67; identified by sequence similarity; putative	0.787
HI_1053	polA	HI_1053	HI_0856	Uncharacterized protein HI_1053; Similar to GB-M66060 SP-P27749 PID-141897 percent identity- 31.86; identified by sequence similarity; putative	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3’-5’ and 5’-3’ exonuclease activity	0.641
polA	HI_1051	HI_0856	HI_1051	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3’-5’ and 5’-3’ exonuclease activity	Uncharacterized ABC transporter ATP-binding protein HI_1051; Similar to GB-AL009126 percent identity- 33.76; identified by sequence similarity; putative	0.460
polA	HI_1053	HI_0856	HI_1053	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3’-5’ and 5’-3’ exonuclease activity	Uncharacterized protein HI_1053; Similar to GB-M66060 SP-P27749 PID-141897 percent identity- 31.86; identified by sequence similarity; putative	0.641

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