phnP protein (Waddlia chondrophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

phnP

Metal-dependent hydrolases of the beta- lactamase superfamily I. (246 aa)

Predicted Functional Partners:

hflX

0.802

radC

0.794

wcw_1232

0.773

wcw_1236

0.725

mgtE

0.711

ribF

0.579

wcw_1237

0.566

murB

0.543

zntA

0.537

wcw_1238

0.477

Your Current Organism:

Waddlia chondrophila

NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hflX	phnP	wcw_1234	wcw_1235	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	Metal-dependent hydrolases of the beta- lactamase superfamily I.	0.802
hflX	radC	wcw_1234	wcw_1233	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	DNA repair proteins; Belongs to the UPF0758 family.	0.794
hflX	wcw_1232	wcw_1234	wcw_1232	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	Putative membrane protein.	0.773
hflX	wcw_1236	wcw_1234	wcw_1236	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	Hypothetical protein.	0.712
hflX	wcw_1237	wcw_1234	wcw_1237	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	FAD dependent oxidoreductase; Glycine/D-amino acid oxidases (deaminating).	0.558
hflX	wcw_1238	wcw_1234	wcw_1238	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	Hypothetical protein.	0.477
mgtE	phnP	wcw_0959	wcw_1235	Putative Mg2+ transporter; Mg/Co/Ni transporter MgtE (contains CBS domain).	Metal-dependent hydrolases of the beta- lactamase superfamily I.	0.711
mgtE	zntA	wcw_0959	wcw_1634	Putative Mg2+ transporter; Mg/Co/Ni transporter MgtE (contains CBS domain).	Heavy metal translocating ATPase, P-type; Cation transport ATPase.	0.638
murB	phnP	wcw_0793	wcw_1235	Putative UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.	Metal-dependent hydrolases of the beta- lactamase superfamily I.	0.543
phnP	hflX	wcw_1235	wcw_1234	Metal-dependent hydrolases of the beta- lactamase superfamily I.	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	0.802
phnP	mgtE	wcw_1235	wcw_0959	Metal-dependent hydrolases of the beta- lactamase superfamily I.	Putative Mg2+ transporter; Mg/Co/Ni transporter MgtE (contains CBS domain).	0.711
phnP	murB	wcw_1235	wcw_0793	Metal-dependent hydrolases of the beta- lactamase superfamily I.	Putative UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.	0.543
phnP	radC	wcw_1235	wcw_1233	Metal-dependent hydrolases of the beta- lactamase superfamily I.	DNA repair proteins; Belongs to the UPF0758 family.	0.794
phnP	ribF	wcw_1235	wcw_0855	Metal-dependent hydrolases of the beta- lactamase superfamily I.	Putative riboflavin kinase/FMN adenylyltransferase; FAD synthase; Belongs to the ribF family.	0.579
phnP	wcw_1232	wcw_1235	wcw_1232	Metal-dependent hydrolases of the beta- lactamase superfamily I.	Putative membrane protein.	0.773
phnP	wcw_1236	wcw_1235	wcw_1236	Metal-dependent hydrolases of the beta- lactamase superfamily I.	Hypothetical protein.	0.725
phnP	wcw_1237	wcw_1235	wcw_1237	Metal-dependent hydrolases of the beta- lactamase superfamily I.	FAD dependent oxidoreductase; Glycine/D-amino acid oxidases (deaminating).	0.566
phnP	wcw_1238	wcw_1235	wcw_1238	Metal-dependent hydrolases of the beta- lactamase superfamily I.	Hypothetical protein.	0.477
phnP	zntA	wcw_1235	wcw_1634	Metal-dependent hydrolases of the beta- lactamase superfamily I.	Heavy metal translocating ATPase, P-type; Cation transport ATPase.	0.537
radC	hflX	wcw_1233	wcw_1234	DNA repair proteins; Belongs to the UPF0758 family.	GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	0.794