STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG30958.1KEGG: tcx:Tcr_2125 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal. (478 aa)    
Predicted Functional Partners:
AEG30957.1
KEGG: tcx:Tcr_2126 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.
 
    0.859
AEG30963.1
PFAM: FAD dependent oxidoreductase; KEGG: hna:Hneap_1890 amine oxidase.
 
     0.840
AEG30962.1
PFAM: Protein of unknown function DUF1365; KEGG: tgr:Tgr7_1389 hypothetical protein.
 
     0.837
AEG30961.1
KEGG: tgr:Tgr7_1388 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.812
AEG30960.1
Lipoprotein; KEGG: hse:Hsero_1057 lipoprotein.
  
    0.779
AEG30959.1
KEGG: tgr:Tgr7_1384 hypothetical protein.
       0.778
AEG30964.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: abu:Abu_1209 short chain dehydrogenase/reductase family oxidoreductase.
 
    0.627
AEG30966.1
KEGG: tgr:Tgr7_1387 major facilitator superfamily transport protein.
  
    0.567
AEG30965.1
KEGG: pna:Pnap_1456 hypothetical protein.
       0.565
Your Current Organism:
Thiomicrospira cyclica
NCBI taxonomy Id: 717773
Other names: T. cyclica ALM1, Thioalkalimicrobium cyclicum ALM1, Thiomicrospira cyclica ALM1
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