STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (470 aa)    
Predicted Functional Partners:
AEG32322.1
KEGG: tcx:Tcr_0839 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, small chain.
 
 0.999
AEG32405.1
KEGG: tcx:Tcr_0013 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase.
 
 
 0.979
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.915
pgk
HAMAP: Phosphoglycerate kinase; KEGG: tcx:Tcr_0246 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.910
AEG31917.1
KEGG: tcx:Tcr_0705 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.
     
 0.901
AEG32321.1
KEGG: sye:Syncc9902_1612 putative carboxysome structural peptide CsoS2.
 
   
 0.759
AEG30823.1
KEGG: tcx:Tcr_0151 hexapaptide repeat-containing transferase.
    
 
 0.738
AEG32318.1
Carboxysome peptide B; KEGG: tcx:Tcr_0843 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; TIGRFAM: Carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
   
 0.718
AEG32319.1
Carboxysome peptide A; KEGG: tcx:Tcr_0842 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; TIGRFAM: Carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
   
 0.708
AEG31498.1
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: tcx:Tcr_1242 HAD family hydrolase.
 
     0.684
Your Current Organism:
Thiomicrospira cyclica
NCBI taxonomy Id: 717773
Other names: T. cyclica ALM1, Thioalkalimicrobium cyclicum ALM1, Thiomicrospira cyclica ALM1
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