STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ90609.1TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: mmw:Mmwyl1_3267 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; Belongs to the monomeric-type IDH family. (739 aa)    
Predicted Functional Partners:
ADZ91510.1
Aconitate hydratase; KEGG: mmw:Mmwyl1_2097 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; PFAM: Aconitase B, N-terminal, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha.
  
 
 0.944
ADZ90779.1
2-oxoglutarate dehydrogenase, E1 subunit; SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: mmw:Mmwyl1_2800 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component.
   
 
 0.920
ADZ90608.1
TIGRFAM: Adenylosuccinate lyase; KEGG: mmw:Mmwyl1_3268 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal/plant; Lyase 1, N-terminal; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
  0.908
ADZ90002.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
  
 0.886
ADZ89718.1
KEGG: mmw:Mmwyl1_4114 glutamate synthase subunit alpha; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
     
 0.879
ADZ92601.1
PFAM: Bacterial NAD-glutamate dehydrogenase; KEGG: mmw:Mmwyl1_1110 NAD-glutamate dehydrogenase.
   
 
 0.818
argH
PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: mmw:Mmwyl1_3590 argininosuccinate lyase.
    
 0.807
ADZ89353.1
TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: mmw:Mmwyl1_0048 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Belongs to the aldehyde dehydrogenase family.
   
 
  0.804
ADZ89364.1
KEGG: hel:HELO_1056 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain.
   
 
  0.804
ADZ89719.1
TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 2; KEGG: mmw:Mmwyl1_4113 glutamate synthase small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.804
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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