STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THOM_1050RNA-dependent RNA polymerase. (714 aa)    
Predicted Functional Partners:
THOM_1051
RNA-dependent RNA polymerase.
 
      0.650
THOM_2678
RNA helicase nonsense mRNA reducing factor (PNORF1).
 
   
 0.572
THOM_2705
Argonaute.
    
 
 0.548
THOM_2679
RNA helicase nonsense mRNA reducing factor (PNORF1).
     
 0.506
THOM_2862
Uncharacterized protein.
    
 
 0.485
THOM_2863
DsRNA-specific nuclease Dicer, ribonuclease.
    
 
 0.485
THOM_0463
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.484
Your Current Organism:
Trachipleistophora hominis
NCBI taxonomy Id: 72359
Other names: T. hominis
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