V4KMZ1_EUTSA protein (Eutrema salsugineum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4KMZ1_EUTSA

Uncharacterized protein. (501 aa)

Predicted Functional Partners:

V4LJ48_EUTSA

0.820

V4MDN5_EUTSA

0.566

V4LZT9_EUTSA

0.547

V4JS01_EUTSA

0.432

V4MKA0_EUTSA

0.427

V4KPP9_EUTSA

0.420

V4MHJ8_EUTSA

0.411

Your Current Organism:

Eutrema salsugineum

NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4JS01_EUTSA	V4KMZ1_EUTSA	V4JS01	V4KMZ1	Uncharacterized protein.	Uncharacterized protein.	0.432
V4JS01_EUTSA	V4LJ48_EUTSA	V4JS01	V4LJ48	Uncharacterized protein.	Uncharacterized protein.	0.760
V4KMZ1_EUTSA	V4JS01_EUTSA	V4KMZ1	V4JS01	Uncharacterized protein.	Uncharacterized protein.	0.432
V4KMZ1_EUTSA	V4KPP9_EUTSA	V4KMZ1	V4KPP9	Uncharacterized protein.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.420
V4KMZ1_EUTSA	V4LJ48_EUTSA	V4KMZ1	V4LJ48	Uncharacterized protein.	Uncharacterized protein.	0.820
V4KMZ1_EUTSA	V4LZT9_EUTSA	V4KMZ1	V4LZT9	Uncharacterized protein.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.547
V4KMZ1_EUTSA	V4MDN5_EUTSA	V4KMZ1	V4MDN5	Uncharacterized protein.	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.566
V4KMZ1_EUTSA	V4MHJ8_EUTSA	V4KMZ1	V4MHJ8	Uncharacterized protein.	Dof-type domain-containing protein.	0.411
V4KMZ1_EUTSA	V4MKA0_EUTSA	V4KMZ1	V4MKA0	Uncharacterized protein.	Dof-type domain-containing protein.	0.427
V4KPP9_EUTSA	V4KMZ1_EUTSA	V4KPP9	V4KMZ1	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.420
V4LJ48_EUTSA	V4JS01_EUTSA	V4LJ48	V4JS01	Uncharacterized protein.	Uncharacterized protein.	0.760
V4LJ48_EUTSA	V4KMZ1_EUTSA	V4LJ48	V4KMZ1	Uncharacterized protein.	Uncharacterized protein.	0.820
V4LZT9_EUTSA	V4KMZ1_EUTSA	V4LZT9	V4KMZ1	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.547
V4MDN5_EUTSA	V4KMZ1_EUTSA	V4MDN5	V4KMZ1	MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Uncharacterized protein.	0.566
V4MHJ8_EUTSA	V4KMZ1_EUTSA	V4MHJ8	V4KMZ1	Dof-type domain-containing protein.	Uncharacterized protein.	0.411
V4MKA0_EUTSA	V4KMZ1_EUTSA	V4MKA0	V4KMZ1	Dof-type domain-containing protein.	Uncharacterized protein.	0.427

Server load: low (38%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About