STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4LP21_EUTSATCP domain-containing protein. (195 aa)    
Predicted Functional Partners:
V4MC46_EUTSA
TCP domain-containing protein.
      
 0.547
V4M7R1_EUTSA
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.517
V4NRH4_EUTSA
OBERON-like protein; Probable transcription factor.
  
     0.509
V4KRA3_EUTSA
OBERON-like protein; Probable transcription factor.
  
     0.508
V4KS22_EUTSA
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.496
V4KP32_EUTSA
FRIGIDA-like protein; Belongs to the Frigida family.
  
     0.494
V4LEA6_EUTSA
TCP domain-containing protein.
  
 
 
 0.493
V4MJM2_EUTSA
Methyltransferase.
  
     0.491
V4KKJ4_EUTSA
F-box domain-containing protein.
  
     0.489
V4L3D9_EUTSA
NAC domain-containing protein.
  
     0.487
Your Current Organism:
Eutrema salsugineum
NCBI taxonomy Id: 72664
Other names: Arabidopsis salsuginea, E. salsugineum, Eutrema salsugineum (Pall.) Al-Shehbaz & Warwick, 2005, Hesperis salsuginea, Sisymbrium salsugineum, Stenophragma salsugineum, Thellungiella salsuginea, Thelypodium salsugineum, saltwater cress
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