STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001748285_00487Unannotated protein. (525 aa)    
Predicted Functional Partners:
GCA_001748285_00321
Unannotated protein.
 
 0.998
GCA_001748285_02544
Unannotated protein.
  
 0.973
GCA_001748285_00318
Unannotated protein.
  
 
 0.900
GCA_001748285_02855
Unannotated protein.
  
 0.874
GCA_001748285_02335
Unannotated protein.
    
 0.847
GCA_001748285_00463
Unannotated protein.
     
 0.818
GCA_001748285_01677
Unannotated protein.
  
 
 0.817
GCA_001748285_04051
Unannotated protein.
   
 
 0.800
GCA_001748285_02853
Unannotated protein.
   
 
 0.795
GCA_001748285_03282
Unannotated protein.
   
 
 0.795
Your Current Organism:
Thermogemmatispora onikobensis
NCBI taxonomy Id: 732234
Other names: JCM 16817, KCTC 19768, Ktedonobacteria bacterium ONI-1, T. onikobensis, Thermogemmatispora onikobensis Yabe et al. 2011, strain ONI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.