STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GX50_06320DNA excision repair protein ERCC-1. (360 aa)    
Predicted Functional Partners:
GX50_03074
DNA excision repair protein ERCC-4.
   
 0.998
GX50_00954
DNA repair protein.
    
 0.983
GX50_04254
Crossover junction endonuclease MUS81.
   
 0.982
GX50_01499
Asparagine-tRNA ligase.
   
 0.956
GX50_02133
Nuclear protein localization protein 4.
    
 0.954
GX50_02139
ATP-dependent DNA helicase MPH1.
    
 0.934
GX50_06520
DNA excision repair protein ERCC-5.
    
 0.894
GX50_07603
NTF2 domain-containing protein.
   
 0.873
GX50_07602
Golgi apparatus membrane protein TVP18.
   
 0.868
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
   
 0.864
Your Current Organism:
Emmonsia crescens
NCBI taxonomy Id: 73230
Other names: ATCC 13704, Ajellomyces crescens, CBS 177.60, Chrysosporium parvum var. crescens, E. crescens, Emmonsia parva var. crescens, UAMH 3008
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