STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GX50_030142-methylcitrate dehydratase. (558 aa)    
Predicted Functional Partners:
GX50_05122
Uncharacterized protein.
 
   
  0.745
GX50_07541
SH3 domain-containing protein.
 
      0.679
GX50_05070
Essential nuclear protein 1.
   
  0.621
GX50_00416
Pre-rRNA-processing protein TSR1.
   
  0.617
GX50_07333
Protein LTV1.
   
  0.602
GX50_03146
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.599
GX50_00311
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.599
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.598
GX50_00539
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  0.598
GX50_05234
Farnesyl-diphosphate farnesyltransferase.
   
 0.596
Your Current Organism:
Emmonsia crescens
NCBI taxonomy Id: 73230
Other names: ATCC 13704, Ajellomyces crescens, CBS 177.60, Chrysosporium parvum var. crescens, E. crescens, Emmonsia parva var. crescens, UAMH 3008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.