STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_6025Uncharacterized protein. (1164 aa)    
Predicted Functional Partners:
BMF94_4989
t-SNARE coiled-coil homology domain-containing protein.
    
  0.758
BMF94_5222
Crossover junction endonuclease MUS81.
    
 0.663
BMF94_6639
Uncharacterized protein.
    
 0.656
BMF94_4972
DNA polymerase.
   
 0.646
BMF94_3074
Uncharacterized protein.
    
  0.643
BMF94_0968
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.631
BMF94_4316
WD_REPEATS_REGION domain-containing protein.
    
 0.624
BMF94_2736
ERCC4 domain-containing protein.
    
 0.620
BMF94_4927
Small nuclear ribonucleoprotein Sm D2.
    
 0.611
BMF94_5286
Uncharacterized protein.
    
 0.610
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
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