STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMF94_5787Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (447 aa)    
Predicted Functional Partners:
BMF94_6508
GTP_EFTU_D3 domain-containing protein.
   
 
 0.991
BMF94_7046
WD_REPEATS_REGION domain-containing protein.
    
 
 0.927
BMF94_1974
Uncharacterized protein.
    
 
 0.916
BMF94_6493
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.910
BMF94_5545
Putative DNA-(Apurinic or apyrimidinic site) lyase; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.907
BMF94_7018
Putative Sucrose synthase.
    
 
 0.905
BMF94_5903
Putative Chrysanthemyl diphosphate synthase.
    
 
 0.903
BMF94_0270
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.898
BMF94_3628
Uncharacterized protein.
   
   0.897
BMF94_6313
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.896
Your Current Organism:
Rhodotorula taiwanensis
NCBI taxonomy Id: 741276
Other names: A1-01, BCRC 23118, CBS 11729, R. taiwanensis, Rhodotorula sp. BCRC 23118, Rhodotorula taiwanensis Lee & Huang 2011
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.