Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EJZ62188.1 | EJZ66403.1 | HMPREF9448_02871 | HMPREF9448_00580 | Hypothetical protein. | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.481 |
| EJZ62188.1 | alaS | HMPREF9448_02871 | HMPREF9448_00613 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.401 |
| EJZ66400.1 | EJZ66401.1 | HMPREF9448_00577 | HMPREF9448_00578 | Hypothetical protein. | ChvD family ATP-binding cassette protein. | 0.773 |
| EJZ66400.1 | EJZ66403.1 | HMPREF9448_00577 | HMPREF9448_00580 | Hypothetical protein. | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.594 |
| EJZ66400.1 | def | HMPREF9448_00577 | HMPREF9448_00579 | Hypothetical protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.594 |
| EJZ66401.1 | EJZ66400.1 | HMPREF9448_00578 | HMPREF9448_00577 | ChvD family ATP-binding cassette protein. | Hypothetical protein. | 0.773 |
| EJZ66401.1 | EJZ66403.1 | HMPREF9448_00578 | HMPREF9448_00580 | ChvD family ATP-binding cassette protein. | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.597 |
| EJZ66401.1 | def | HMPREF9448_00578 | HMPREF9448_00579 | ChvD family ATP-binding cassette protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.607 |
| EJZ66403.1 | EJZ62188.1 | HMPREF9448_00580 | HMPREF9448_02871 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.481 |
| EJZ66403.1 | EJZ66400.1 | HMPREF9448_00580 | HMPREF9448_00577 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.594 |
| EJZ66403.1 | EJZ66401.1 | HMPREF9448_00580 | HMPREF9448_00578 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | ChvD family ATP-binding cassette protein. | 0.597 |
| EJZ66403.1 | EJZ66404.1 | HMPREF9448_00580 | HMPREF9448_00581 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein. | 0.431 |
| EJZ66403.1 | EJZ66469.1 | HMPREF9448_00580 | HMPREF9448_00647 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.616 |
| EJZ66403.1 | alaS | HMPREF9448_00580 | HMPREF9448_00613 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.556 |
| EJZ66403.1 | def | HMPREF9448_00580 | HMPREF9448_00579 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.791 |
| EJZ66403.1 | miaA | HMPREF9448_00580 | HMPREF9448_00435 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.404 |
| EJZ66403.1 | miaA-2 | HMPREF9448_00580 | HMPREF9448_01281 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.404 |
| EJZ66403.1 | ruvA | HMPREF9448_00580 | HMPREF9448_00432 | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.425 |
| EJZ66404.1 | EJZ66403.1 | HMPREF9448_00581 | HMPREF9448_00580 | Hypothetical protein. | YqgF family RNAse H domain-containing protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.431 |
| EJZ66404.1 | def | HMPREF9448_00581 | HMPREF9448_00579 | Hypothetical protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.431 |
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