STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG43805.1KEGG: xce:Xcel_1050 hypothetical protein. (101 aa)    
Predicted Functional Partners:
AEG43806.1
KEGG: xce:Xcel_1051 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal.
 
     0.852
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.772
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.756
AEG44331.1
SMART: HTH transcriptional regulator, MerR; KEGG: xce:Xcel_1741 MerR family transcriptional regulator.
  
     0.725
nucS
UPF0286 protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.705
AEG42827.1
KEGG: xce:Xcel_0008 putative FHA domain containing protein.
  
     0.661
AEG43622.1
KEGG: xce:Xcel_0791 hypothetical protein; TIGRFAM: Protein of unknown function DUF2342; PFAM: Protein of unknown function DUF2342.
  
     0.635
AEG44585.1
KEGG: xce:Xcel_2022 hypothetical protein.
  
     0.623
AEG43508.1
KEGG: xce:Xcel_0689 IMP dehydrogenase family protein; TIGRFAM: IMP dehydrogenase related 2; PFAM: IMP dehydrogenase/GMP reductase.
  
     0.622
AEG43604.1
PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: xce:Xcel_0769 peptidase M24; Belongs to the peptidase M24B family.
  
     0.622
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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