STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG44478.1PFAM: Xylose isomerase, TIM barrel domain; KEGG: pwa:Pecwa_2644 xylose isomerase. (329 aa)    
Predicted Functional Partners:
AEG43280.1
Rhamnulokinase; KEGG: xce:Xcel_2655 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal.
 
  
 0.936
AEG43277.1
KEGG: xce:Xcel_0886 L-rhamnose isomerase; TIGRFAM: Rhamnose isomerase related; PFAM: Xylose isomerase, TIM barrel domain.
  
  
 
0.920
AEG44480.1
1-deoxy-D-xylulose-5-phosphate synthase; KEGG: fre:Franean1_0407 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal.
 
     0.861
AEG44479.1
Transketolase; KEGG: hel:HELO_3974 transketolase, subunit A; PFAM: Transketolase, N-terminal.
 
     0.853
AEG44481.1
PFAM: Putative sugar-binding region; KEGG: fre:Franean1_0409 DeoR family transcriptional regulator.
 
     0.837
AEG44472.1
Periplasmic lipoprotein; PFAM: Uncharacterised conserved protein UCP033535, periplasmic lipoprotein; KEGG: ret:RHE_PF00036 hypothetical protein.
 
     0.782
AEG44469.1
PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_PF00037 ribose ABC transporter substrate-binding protein.
 
     0.694
AEG44477.1
Glycerol kinase; KEGG: rcp:RCAP_rcc02653 glycerol kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; Belongs to the FGGY kinase family.
       0.606
AEG45262.1
TIGRFAM: Xylulokinase; KEGG: xce:Xcel_2828 xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal.
 
  
 0.590
AEG43279.1
TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; KEGG: xce:Xcel_0887 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: Class II aldolase/adducin, N-terminal; Short-chain dehydrogenase/reductase SDR.
 
     0.514
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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