STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF20233.1PFAM: virulence protein, SciE type; KEGG: pmy:Pmen_2327 virulence protein, SciE type. (266 aa)    
Predicted Functional Partners:
AEF20232.1
KEGG: pmy:Pmen_2328 gpW/GP25 family protein; TIGRFAM: Type VI secretion system, lysozyme-related; PFAM: GPW/gp25.
 
    0.990
AEF20231.1
KEGG: pap:PSPA7_0160 hypothetical protein; TIGRFAM: Type VI secretion system, VCA0110; PFAM: Type VI secretion system, VCA0110.
 
    0.989
AEF20236.1
Type VI secretion protein, VC_A0107 family; KEGG: pap:PSPA7_0155 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP028301; PFAM: Uncharacterised conserved protein UCP028301.
 
   0.989
AEF20241.1
KEGG: pap:PSPA7_0149 hypothetical protein; TIGRFAM: Type IV / VI secretion system, DotU; Type VI secretion system, OmpA/MotB; PFAM: Type IV / VI secretion system, DotU; Outer membrane protein, OmpA/MotB, C-terminal.
 
  
 0.984
AEF20235.1
Type VI secretion protein, EvpB/VC_A0108 family; KEGG: pag:PLES_00851 hypothetical protein; TIGRFAM: Protein of unknown function DUF877; PFAM: Protein of unknown function DUF877.
 
    0.970
AEF20230.1
Type VI secretion protein, VC_A0111 family; KEGG: pag:PLES_00901 hypothetical protein; TIGRFAM: Protein of unknown function DUF1305; PFAM: Protein of unknown function DUF1305.
 
    0.967
AEF20243.1
KEGG: pmy:Pmen_2315 hypothetical protein; TIGRFAM: Type VI secretion system-associated, BMAA0400; PFAM: Type VI secretion system-associated, BMAA0400.
 
  
 0.965
AEF20229.1
TIGRFAM: ATPase, type VI secretion system, ClpV1; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: pmy:Pmen_2331 ATPase; SMART: ATPase, AAA+ type, core; Belongs to the ClpA/ClpB family.
 
    0.961
AEF20228.1
Type VI secretion system Vgr family protein; KEGG: pag:PLES_24191 hypothetical protein; TIGRFAM: Rhs element Vgr protein, subgroup; Rhs element Vgr protein; PFAM: Protein of unknown function DUF2345; Gp5, C-terminal.
 
  
 0.953
AEF20234.1
KEGG: pag:PLES_00861 hypothetical protein; TIGRFAM: Type VI secretion system effector, Hcp1; PFAM: Virulence factor, secretion apparatus.
 
  
 0.924
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.