STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psefu_2971KEGG: pau:PA14_47010 hypothetical protein (84 aa)    
Predicted Functional Partners:
Psefu_2972
PFAM: Protein of unknown function DUF2025; KEGG: pmy:Pmen_3180 hypothetical protein
       0.545
Psefu_2973
PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pmy:Pmen_3184 GCN5-related N-acetyltransferase
       0.434
Psefu_2969
Uncharacterized protein; KEGG: fjo:Fjoh_1994 short-chain dehydrogenase/reductase SDR
       0.402
Psefu_2970
PFAM: NUDIX hydrolase domain; KEGG: pmy:Pmen_3179 NUDIX hydrolase
       0.402
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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