STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32626.1Hypothetical protein; Identified by Glimmer3; putative. (541 aa)    
Predicted Functional Partners:
EFO32625.1
Tail fiber protein; Identified by match to protein family HMM PF00041.
  
    0.817
EFO32623.1
Conserved hypothetical protein; Identified by match to protein family HMM PF08875.
  
    0.794
EFO32624.1
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS; Identified by match to protein family HMM PF00877.
  
  
 0.778
EFO32622.1
Short-chain dehydrogenase/reductase SDR.
       0.773
EFO32627.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
EFO32628.1
Conserved hypothetical protein.
       0.773
EFO32617.1
Gene transfer agent.
   
   0.647
EFO32615.1
Putative phage head-tail adaptor; Identified by match to protein family HMM TIGR01563.
  
   0.635
EFO32613.1
Phage protein DNA packaging protein; Identified by match to protein family HMM TIGR02215.
   
   0.631
EFO32618.1
Conserved hypothetical protein.
   
   0.631
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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