STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO28498.1GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. (227 aa)    
Predicted Functional Partners:
EFO28911.1
Putative GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.767
EFO28553.1
GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.767
EFO34093.1
GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.763
EFO29847.1
GntR family transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.738
EFO34199.1
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
     0.723
EFO34563.1
Pyruvate dehydrogenase complex repressor; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.579
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.508
glnA_1
Gamma-glutamylputrescine synthetase; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
       0.499
EFO32084.1
Transcriptional regulator NanR; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.485
glnA_2
Gamma-glutamylputrescine synthetase; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
       0.482
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
Server load: low (24%) [HD]