STRINGSTRING
lysS protein (Prochlorococcus marinus MIT9313) - STRING interaction network
"lysS" - Lysine--tRNA ligase in Prochlorococcus marinus MIT9313
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSLysine--tRNA ligase; Alternative locus ID-P9313_01561; Belongs to the class-II aminoacyl-tRNA synthetase family (508 aa)    
Predicted Functional Partners:
pheT
Phenylalanine--tRNA ligase beta subunit; Alternative locus ID-P9313_08681; putative assignment; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily (815 aa)
 
   
  0.950
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (528 aa)
     
   
  0.941
PMT_1905
Histidine--tRNA ligase; Alternative locus ID-P9313_23991 (426 aa)
     
 
  0.876
argS
Arginine--tRNA ligase; Alternative locus ID-P9313_25901 (612 aa)
   
 
  0.870
ileS
Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile); Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily (968 aa)
   
 
  0.835
pheS
Phenylalanine--tRNA ligase alpha subunit; Alternative locus ID-P9313_04381; definite assignment; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily (335 aa)
   
   
  0.808
thrS
Threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction- L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr) (640 aa)
   
 
  0.801
leuS
Leucine--tRNA ligase; Alternative locus ID-P9313_08421; Belongs to the class-I aminoacyl-tRNA synthetase family (878 aa)
   
 
  0.793
proS,drpA
Proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction- proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as ’pretransfer’ editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated ’posttransfer’ editing and involves deacy [...] (599 aa)
     
 
  0.790
PMT_0146
Two-component response regulator; Alternative locus ID-P9313_01551 (290 aa)
     
      0.776
Your Current Organism:
Prochlorococcus marinus MIT9313
NCBI taxonomy Id: 74547
Other names: P. marinus str. MIT 9313, Prochlorococcus marinus MIT9313, Prochlorococcus marinus str. MIT 9313, Prochlorococcus sp. MIT 9313, Prochlorococcus sp. MIT9313
Server load: low (13%) [HD]