STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMT_1486Possible multidrug efflux transporter, MFS family; Alternative locus ID:P9313_18741 (413 aa)    
Predicted Functional Partners:
PMT_0909
DAACS family symporter for glutamate/aspartate/dicarboxylates; Alternative locus ID:P9313_10841; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family
 
  
 0.666
PMT_1873
Possible transporter, MFS family; Alternative locus ID:P9313_23621
 
 
 
 0.591
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily
  
    0.564
gspD
Possible general (Type II) secretion pathway protein D; Alternative locus ID:P9313_26321; Belongs to the GSP D family
   
  
 0.548
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
  
  
 0.443
putative
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily
     
 0.413
Your Current Organism:
Prochlorococcus marinus MIT9313
NCBI taxonomy Id: 74547
Other names: P. marinus str. MIT 9313, Prochlorococcus marinus MIT9313, Prochlorococcus marinus str. MIT 9313, Prochlorococcus sp. MIT 9313, Prochlorococcus sp. MIT9313
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