STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
parEparE_Gneg: DNA topoisomerase IV, B subunit (632 aa)    
Predicted Functional Partners:
parC
parC_Gneg: DNA topoisomerase IV, A subunit
 
 0.992
gyrA
gyrA: DNA gyrase, A subunit
 
 0.970
polA
Pola: DNA polymerase I
  
 
 0.717
uvrB
Uvrb: excinuclease ABC subunit B
  
  
 0.678
uvrA
Uvra: excinuclease ABC subunit A
  
  
 0.677
dnaK
prok_dnaK: chaperone protein DnaK; Belongs to the heat shock protein 70 family
  
 
 0.651
recA
tigrfam_recA: protein RecA
  
 
 0.633
dnaJ
dnaJ_bact: chaperone protein DnaJ
  
 
 0.632
DR93_1547
nrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
   
  
 0.627
DR93_1805
annotation not available
   
 
 0.625
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
Server load: low (12%) [HD]