STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_1157rnfE: electron transport complex, RnfABCDGE type, E subunit (242 aa)    
Predicted Functional Partners:
DR93_1158
rnfG: electron transport complex, RnfABCDGE type, G subunit
 
 0.993
rnfD
rnfD: electron transport complex, RnfABCDGE type, D subunit; Belongs to the NqrB/RnfD family
 
 
 0.990
DR93_1160
rnfC: electron transport complex, RnfABCDGE type, C subunit
 
 
 0.986
DR93_1161
Electron transport complex protein RnfB; Part of a membrane complex involved in electron transport
 
  
 0.982
nth
Nth: endonuclease III
 
  
 0.973
DR93_1162
rnfA: electron transport complex, RnfABCDGE type, A subunit
 
 
0.928
DR93_1155
Uncharacterized protein; Sodium:neurotransmitter symporter family protein
       0.774
nqrB
NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; Belongs to the NqrB/RnfD family
 
  
 0.606
msbB
lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
      0.585
DR93_584
annotation not available
 
  
 0.548
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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