STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR93_12Uncharacterized protein (103 aa)    
Predicted Functional Partners:
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family
  
 0.963
mrdA
pbp2_mrdA: penicillin-binding protein 2
  
   0.832
mrdB
rodA_shape: rod shape-determining protein RodA; Belongs to the SEDS family
  
    0.783
DR93_13
annotation not available
  
   0.717
dacA
annotation not available
 
    0.692
DR93_8
annotation not available
  
    0.688
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
 
 
 0.686
pheT
pheT_bact: phenylalanine--tRNA ligase, beta subunit
 
  
 0.668
metG
Methionyl-tRNA synthetase; metG: methionine--tRNA ligase
  
  
 0.609
DR93_1368
Bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
      
 0.604
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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