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map protein (Pasteurella multocida) - STRING interaction network
"map" - met_pdase_I: methionine aminopeptidase, type I in Pasteurella multocida
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mapmet_pdase_I- methionine aminopeptidase, type I (267 aa)    
Predicted Functional Partners:
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; ksgA- dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family (288 aa)
 
 
  0.804
DR93_1129
annotation not available (262 aa)
 
   
  0.757
glnD
PII uridylyl-transferase; UTase_glnD- protein-P-II uridylyltransferase (864 aa)
 
        0.736
alaS
alaS- alanine--tRNA ligase (874 aa)
   
   
  0.652
rplB
rplB_bact- ribosomal protein L2 (273 aa)
 
 
  0.632
erpA
annotation not available (113 aa)
 
          0.625
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (209 aa)
 
 
  0.612
infB
IF-2- translation initiation factor IF-2 (833 aa)
   
 
  0.608
rpsB
rpsB_bact- ribosomal protein S2 (240 aa)
 
 
  0.592
fusA
EF-G- translation elongation factor G (700 aa)
 
 
  0.590
Your Current Organism:
Pasteurella multocida
NCBI taxonomy Id: 747
Other names: ATCC 43137, Bacterium multocidum, CCUG 17976, CCUG 17976 B, CCUG 43504, CIP 103286, DSM 16031, LMG 2851, Micrococcus gallicidus, NCTC 10322, P. multocida, Pasteurella cholerae-gallinarum, Pasteurella gallicida, Pasteurella multocida
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